Project information
Biomolecular Center
- Project Identification
- LN00A016
- Project Period
- 7/2000 - 12/2004
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Centres
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Keywords
- Biomolecules, protein, oligonucleotides, NMR spectroscopy, computer simulations and modeling, protein engineering, DNA vaccines, bacteria "quorum systems"
- Cooperating Organization
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Institute of Biophysics
- Responsible person prof. RNDr. Jiří Šponer, DrSc.
- Responsible person doc. RNDr. Ivan Rychlík, Ph.D.
Biomolecular center is designed as an expert laboratory for studiyng the structure and properties of biologically relevant molecules and biopolymers, with main emphasis on proteins and nucleic acid fragments. On the horizontal level the Center will havea strong background in methods for studiing the biomolecules on the atomic level using NMR spectroscopy, molecular modeling and X-ray crystallography with appropriate support of biochemistry and molecular biology. The Center will be able to studythe biomolecular systems in the vertical direction starting with the atomic structure, through their in vitro properties to their function in living cells. From the very beginning, the Center will activelly participate in Ph.D programs (already now 14PhD. students). In the final stage, 25 core scientist will be employed in the Center with a significant support from postdoctoral fellows and PhD. students (2/3 of all coworkers). The group is involved in a large number of international projects.
Publications
Total number of publications: 127
2004
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Studium vlivu intermolekulárních inetrakcí na 15N NMR chemické posuny derivátů 6-benzylaminopurinu
IV. Pracovní setkání fyzikálních chemiků a elektrochemiků, year: 2004
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Substrátová specifita haloalkandehalogenáz
Sborník abstraktů, STUDENTSKÁ VĚDECKÁ KONFERENCE v oboru chemie a biochemie, year: 2004
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Štúdium nukleových kyselín v podchladenej vode pomocou NMR metód.
Sborník abstraktů, Studentská vědecká konference v oboru chemie a biochemie, year: 2004
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Temperature Dependent Spectral Density Analysis Applied to Monitoring Backbone Dynamics of Major Urinary Protein-I Complexed with the Pheromone 2-sec-Butyl-4,5-dihydrothiazole
Journal of Biomolecular NMR, year: 2004, volume: 28, edition: 4
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Theoretical and experimental NMR shifts of norsanguinarine and norchelerythrine
Journal of Molecular Structure, year: 2004, volume: 689, edition: 1
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Theoretical Study of 31P chemical shielding tensors in B-DNA
Materials Structure, year: 2004, volume: 11, edition: 1
2003
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A Computer Program for the Simulation of the NOE Effect in NMR Spectroscopy, and Its Implementation into the CICADA Conformational Search Program
Internet Electronic Journal of Molecular Design, year: 2003, volume: 2, edition: 2
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A DFT Analysis of NMR Scalar Interactions Across the Glycosidic Bond in DNA
Journal of the American Chemical Society, year: 2003, volume: 125, edition: 12
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A Novel Mechanism of Proton Transfer in Protonated Peptides
Journal of the American Chemical Society, year: 2003, volume: 125, edition: 45
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Aleuria aurantia lectin displays novel binding mode for fucose. Crystal structure and ligand interaction of a new family of fucolectins.
12th European Carbohydrate Symposium, year: 2003